| WBID | Waterbody | Location | Counties | IR Category | Impairment(s) |
| IA 02-ICM-00145-L_0 | Allen Green Refuge Marsh | Des Moines County S29 T72N R1W 8 mi. E of Mediapolis. | Des Moines | 4c | Flow alteration |
| IA 03-SKU-0080_1 | Big Creek | mo to Saunders Br S17 T71N R6W Henry Co. | Henry | 4d | Organic enrichment/Low DO--Unionized Ammonia |
| IA 01-WPS-0050_1 | Brophy Creek | mouth (S1 T80N R4E Clinton Co.) to confluence with Cherry Cr. in S17 T81N R5E Clinton Co. | Clinton | 5b | Cause Unknown |
| IA 02-CED-0020_2 | Cedar River | from Rock Run Cr. (S28 T80N R3W Cedar Co ) to Hwy 30 bridge at Cedar Rapids in S9 T82N R6W Linn Co. | Cedar--Johnson--Linn | 5a | Flow alteration--Nutrients--Other habitat alterations--Pathogens--Siltation |
| IA 02-IOW-0161_0 | Clear Creek | from confluence with tributary in Sec. 22 T80N R9W (Iowa Co.) to headwaters in S28 T80N R10W (Iowa Co. | Iowa | 5a | Organic enrichment/Low DO |
| IA 03-NSK-0039_0 | Coal Creek | from mouth (SW 1/4 S36 T76N R13W Keokuk Co.) to headwaters in center S17 T77N R13W Keokuk Co. | Keokuk | 5b | Organic enrichment/Low DO--Unionized Ammonia |
| IA 02-IOW-0040-L_0 | Coralville Reservoir | Johnson County S22 T80N R6W (dam) 3 mi N of Iowa City. | Johnson | 5a | Organic enrichment/Low DO--Suspended solids--Turbidity |
| IA 02-ICD-0031_1 | Cottonwood Drain | mouth (SE 1/4 S1 T70N R2W Des Moines Co.) to confluence with unnamed tributary in S13 T71N R2W Des Moines Co. | Des Moines | 5b | Cause Unknown |
| IA 04-LDM-0010_4 | Des Moines River | from confluence with Chequest Cr. (S27 T69N R10W Van Buren Co.) to confluence with Soap Cr. in S35 T71N R12W Wapello Co. | Davis--Van Buren--Wapello | 5b | Cause Unknown |
| IA 04-LDM-0020_1 | Des Moines River | from confluence with Soap Cr. (S35 T71N R12W Wapello Co.) to lowhead dam at Ottumwa in S24 T72N R14W Wapello Co. | Davis--Wapello | 5a | Cause Unknown--Pathogens |
| IA 04-LDM-0020_2 | Des Moines River | from Ottumwa dam (S24 T72N R14W Wapello Co.) to confluence with Cedar Cr in S33 T75N R17W Mahaska Co. | Mahaska--Monroe--Wapello | 5a | Pathogens |
| IA 01-NEM-0060_1 | Duck Creek | mouth (S27 T78N R4E Scott Co.) to County Road (Sec 16-21 T78N R3W Scott Co.). (Note: Segment boundary and use designations changed in 2004 to match 2002 WQ Standards.) | Scott | 5a | Pathogens |
| IA 01-MAQ-0030_1 | Elk River | mouth (Clinton Co.) to North Branch Elk River (S10 T83N R6E Clinton Co.) | Clinton | 5b | Cause Unknown |
| IA 03-SKU-00955-L_0 | Fairfield Municipal Reservoir2 | Jefferson County SE 1/4 S24 T72N R10W near Fairfield. | Jefferson | 4a | |
| IA 04-FOX-0010_2 | Fox River | from unnamed tributary (NW 1/4 S6 T68N R12W Davis Co.) to confluence with unnamed tributary in S29 T69N R15W Davis Co. | Davis | 5b | Organic enrichment/Low DO--Other habitat alterations--Unionized Ammonia |
| IA 03-SKU-00650-L_0 | Geode Lake | Henry County S36 T70N R5W 4 mi. SW of Danville. | Des Moines--Henry | 5a | Nutrients--Pathogens--pH--Siltation |
| IA 02-IOW-0093_0 | Honey Creek | mouth (S1 T75N R5W Louisa Co.) to road crossing in S25 T76N R5W Louisa Co. | Louisa | 5b | Cause Unknown |
| IA 04-LDM-00150-L_0 | Indian Lake | Van Buren County S2 T67N R8W 1 mi SW of Farmington. | Van Buren | 4a | Algal Grwth/Chlorophyll a--Noxious aquatic plants--Nutrients--Organic enrichment/Low DO--pH--Turbidity |
| IA 02-IOW-01150-L_0 | Iowa Lake | Iowa County S19 T79N R11W 4 mi. NNW of Millersburg. | Iowa | 5a | Algal Grwth/Chlorophyll a--Noxious aquatic plants--Nutrients--pH--Turbidity |
| IA 02-IOW-0020_1 | Iowa River | from confluence with Cedar R. to Johnson-Washington Co. line | Johnson--Louisa--Washington | 5b | Nutrients--Other habitat alterations--Siltation |
| IA 02-IOW-0030_1 | Iowa River | from confluence with English R. (Washington Co.) to Burlington Street Dam in Iowa City (Johnson Co.) | Johnson--Washington | 5a | Flow alteration--Nutrients--Other habitat alterations--Pathogens--Siltation |
| IA 02-IOW-0050_1 | Iowa River | from upper end of Coralville Reservoir (=U.S. Highway 218 bridge in SW 1/4 S22 T81N R7W Johnson Co.) to the state Highway 149 bridge in S35 T81N R9W Iowa Co. | Iowa--Johnson | 5a | Pathogens |
| IA 02-IOW-0020_2 | Iowa River | Johnson/Washington county line to English R. | Johnson--Washington | 5b | Nutrients--Other habitat alterations--Siltation |
| IA 01-NEM-00115-L_0 | Klum Lake | Louisa County S25 T75N R2W 2 mi. ESE of Grandview. | Louisa | 4c | Flow alteration |
| IA 03-SKU-01450-L_0 | Lake Darling | Washington County S21 T74N R9W 3 mi W of Brighton. | Washington | 5a | Nutrients--Pathogens--Siltation--Turbidity |
| IA 02-IOW-00390-L_0 | Lake Macbride | Johnson County S29 T81N R6W 4 mi. W of Solon. | Johnson | 5a | Exotic species--Nutrients--Pathogens--Siltation--Turbidity |
| IA 01-NEM-00160-L_0 | Lake Of The Hills | Scott County S25 T78N R2E 1/4 mi W of Davenport. | Scott | 5a | Algal Grwth/Chlorophyll a--Siltation--Turbidity |
| IA 04-LDM-0130_0 | Miller Creek | mouth (S7 T73N R15W Wapello Co.) to unnamed tributary in S29 T73N R16W Monroe Co. | Monroe--Wapello | 5b | Cause Unknown--Organic enrichment/Low DO |
| IA 02-ICM-0010_2 | Mississippi River | from Burlington water supply intake (Des Moines Co.) to confluence with Iowa R (S36 T74N R2W Louisa Co.) | Des Moines--Louisa | 5a | Arsenic--Metals--Pathogens |
| IA 02-ICM-0010_1 | Mississippi River | from confluence with Skunk R. (S8 T68N R2W Des Moines Co.) to the Burlington water supply intake (Des Moines Co.). | Des Moines | 5a | Pathogens |
| IA 03-SKM-0010_2 | Mississippi River | from confluence with Sugar Cr. (S23 T67N R5W Lee Co.) to confluence with Skunk R. | Des Moines--Lee | 5a | Pathogens |
| IA 01-NEM-0010_1 | Mississippi River | from Iowa R. (Louisa Co.) to Lock & Dam 15 at Davenport Scott Co. | Louisa--Muscatine--Scott | 5a | Pathogens |
| IA 01-NEM-0010_3 | Mississippi River | from Lock &Dam 14 at Le Claire (Scott Co.) to confluence with Wapsipinicon R. (Scott / Clinton county line). | Scott | 5a | Pathogens |
| IA 01-NEM-0010_2 | Mississippi River | from Lock &Dam 15 at Davenport (Scott Co.) to Lock & Dam 14 at Le Claire (Scott Co.) (= Pool 15) (Davenport water supply intake is located near river mile 484.) | Scott | 5a | Arsenic--Metals--Pathogens--PCB's |
| IA 01-NEM-0010_4 | Mississippi River | from Wapsipinicon R. (Scott / Clinton Co. line) to Lock & Dam 13 at Clinton (Clinton Co.) | Clinton--Louisa--Muscatine--Scott | 5a | Metals--Nutrients--Pathogens |
| IA 03-SKM-0010_1 | Mississippi River | IA/MO line to confluence with Sugar Cr. in S23 T67N R5W Lee Co. | Lee | 5a | Arsenic--Metals--Pathogens--PCB's |
| IA 04-LDM-0140_1 | Muchakinock Creek | mouth (SW 1/4 NW 1/4 S6 T73N R15W Wapello Co.) to confluence with Little Muchakinock Cr. in S34 T75N R16W Mahaska Co. | Mahaska--Monroe--Wapello | 5b | Nutrients--Other habitat alterations--Unknown toxicity |
| IA 02-CED-0160_0 | Mud Creek | mouth (S10 T78N R2W Muscatine Co.) to confluence with unnamed tributary in S5 T78N R1E Muscatine Co. | Cedar--Muscatine | 4a | Nutrients--Organic enrichment/Low DO--Other habitat alterations--Siltation |
| IA 02-IOW-0162_0 | Muddy Creek | from mouth (S33 T80N R6W Johnson Co.) to headwaters in SW 1/4 S12 T80N R7W Johnson Co. | Johnson | 5a | Other--Unionized Ammonia |
| IA 02-IOW-0150_2 | Old Mans Creek | from confluence with unnamed tributary (N line S1 T78N R7W Johnson Co.) to confluence with unnamed tributary in NE 1/4 S4 T78N R8W Johnson Co. | Johnson | 5b | Cause Unknown |
| IA 02-IOW-0150_1 | Old Mans Creek | mouth (NE 1/4 S27 T78N R6W Johnson Co.) to confluence with unnamed tributary at north line S1 T78N R7W Johnson Co. (approx. 1/2 mile downstream from county road W62). | Johnson | 5b | Cause Unknown |
| IA 04-LDM-00215-L_0 | Ottumwa Lagoon | Wapello County S25 T72N R14W at Ottumwa. | Wapello | 4a | Algal Grwth/Chlorophyll a--Nutrients--Organic enrichment/Low DO--Pesticides--Turbidity |
| IA 02-CED-0157_1 | Pike Run | mouth (SW 1/4 S19 T77N R3W Muscatine Co.) to confluence with unnamed tributary in S9 T77N R3W Muscatine Co. | Muscatine | 5b | Cause Unknown |
| IA 01-MAQ-0130_0 | Prairie Creek | mouth (S17 T84N R3E Jackson Co.) to unnamed tributary in S2 T83N R2E Clinton Co. | Clinton--Jackson | 5b | Cause Unknown |
| IA 02-IOW-0155_1 | Ralston Creek | from mouth (S15 T79N R6W Johnson Co.) to confluence with unnamed tributary in S11 T79N R6W Johnson Co. | Johnson | 5a | Priority organics |
| IA 01-MAQ-0010_1 | Rock Creek | mouth (S31 T81N R6E Clinton Co.) to unnamed tributary in SW 1/4 NE 1/4 S30 T81N R6E Clinton Co. (upstream from PCS Nitrogen). | Clinton | 4a | Unionized Ammonia |
| IA 03-SKU-0085_0 | Saunders Branch | mouth (SW 1/4 S17 T71N R6W Henry Co.) to headwaters | Henry | 5a | Organic enrichment/Low DO--Priority organics--Unionized Ammonia |
| IA 01-MAQ-0005-L_0 | Shrickers Slough | approximately 2 miles SW of Camanche in Sections 5 6 and 7 of T80N R6E Clinton Co. | Clinton | 5a | Algal Grwth/Chlorophyll a--Nutrients--Organic enrichment/Low DO--Turbidity--Unionized Ammonia |
| IA 03-SKU-0010_1 | Skunk River | mouth to confluence with Big Cr. southeast of Mt. Pleasant in S19 T70N R5W in Henry Co. | Des Moines--Henry--Lee | 5a | Pesticides |
| IA 04-LDM-0090_2 | Soap Creek | from confluence with Little Soap Cr. (S1 T70N R13W Davis Co.) to confluence with unnamed tributary in S31 T71N R16W MonroeCo | Appanoose--Davis--Monroe | 5b | Cause Unknown |
| IA 04-LDM-0119_0 | Sugar Creek | mouth (NE 1/4 S32 T72N R13W Wapello Co.) to headwaters in S6 T72N R13W Wapello Co. | Wapello | 5b | Other |
| IA 02-CED-0170_1 | Sugar Creek | mouth (S17 T78N R2W Muscatine Co.) to confluence with Mud Cr. in S10 T78N R2W Muscatine Co. | Muscatine | 5b | Nutrients--Organic enrichment/Low DO--Other habitat alterations--Siltation |
| IA 04-LDM-0133_0 | Unnamed Creek (near Eddyville) | mouth (SW 1/4 S6 T73N R15W Wapello Co.) to headwaters in S11 T73N R16W Monroe Co. | Monroe--Wapello | 4d | Organic enrichment/Low DO--Unionized Ammonia |
| IA 02-IOW-01615_0 | unnamed tributary to Clear Creek | from mouth (NW 1/4 S26 T80N R10W Iowa Co.) to headwaters in S21 T80N R10W Iowa Co. | Iowa | 5a | Organic enrichment/Low DO |
| IA 02-IOW-0187_1 | Walnut Creek | mouth (S31 T82N R12W Benton Co.) to confluence with North Walnut Cr in S7 T81N R13W Poweshiek Co. trib S24 T81N R15W Poweshiek Co. | Benton--Iowa--Poweshiek | 5b | Cause Unknown |
| IA 03-SKU-00945-L_0 | Walton Reservoir | Jefferson County S30 T72N R9W at NE edge of Fairfield. | Jefferson | 5a | Atrazine |
| IA 01-WPS-0010_4 | Wapsipinicon River | from Plum Cr. (S18 T82N R1E Clinton Co.) to confuence with Walnut Cr. in S18 T83N R2W Jones Co. | Cedar--Clinton--Jones | 5b | Flow alteration--Nutrients--Siltation |
| IA 01-WPS-0010_2 | Wapsipinicon River | from Silver Cr. (NW 14 S6 T80N R4E Clinton Co.) to confuence Rock Cr. in S35 T81N R1E Clinton Co.) | Clinton--Scott | 5a | Pathogens |
| IA 01-WPS-0010_1 | Wapsipinicon River | mouth (Scott-Clinton county line) to confuence with Silver Cr. in NW 14 S6 T80N R4E Clinton Co. | Clinton--Jones--Scott | 5a | Pathogens |
| IA 03-SKU-0130_0 | West Fork Crooked Creek | mouth to trib S21 T76N R9W Washington Co | Washington | 5b | Cause Unknown |